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This book introduces Markovian codon models of evolution in maximum likelihood phylogeny inference. The literature show that codon models constitute a more realistic representation of protein-coding sequences when compared against amino acid and nucleotide models. Our results extend this by showing that codon models are also expected to outperform these two competing approaches when re-constructing phylogenetic trees. To enable this analysis, we have created a software package called CodonPhyml, which is freely available under an open source license.
Autorius: | Marcelo Serrano Zanetti |
Leidėjas: | AV Akademikerverlag |
Išleidimo metai: | 2014 |
Knygos puslapių skaičius: | 140 |
ISBN-10: | 363963277X |
ISBN-13: | 9783639632774 |
Formatas: | 220 x 150 x 9 mm. Knyga minkštu viršeliu |
Kalba: | Anglų |
Parašykite atsiliepimą apie „Building Phylogenetic Trees: Maximum Likelihood Methods based on Markovian Codon Models of Molecular Evolution“