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First insights into the genome of Cucurbita pepo are presented in this thesis. 15.67 percent of the 2,349,855 sequence reads generated with Roche¿s 454 Pryosequencer received a classification in preprocessing. Of the remaining sequence reads 38.82% were classified as repeats, 11.08 percent as gene coding region, 7.08 percent as chloroplast and 5.39 percent as mitochondrial sequences. A comparison with the genome of cucumber reinforces this distribution. Moreover, this thesis describes an automated analysis pipeline for genome analyses. It is equipped with a set of newly developed components to perform whole genome analyses with next generation sequencing datasets, to store the obtained results into a database and to visualize them on a web interface. Comparisons with state of the art analysis pipelines show that its visualization capabilities and automatic input checker are rare but very helpful features.
| Autorius: | Richard Schobesberger |
| Leidėjas: | AV Akademikerverlag |
| Išleidimo metai: | 2012 |
| Knygos puslapių skaičius: | 76 |
| ISBN-10: | 3639392221 |
| ISBN-13: | 9783639392227 |
| Formatas: | 220 x 150 x 5 mm. Knyga minkštu viršeliu |
| Kalba: | Anglų |
Parašykite atsiliepimą apie „An Analysis Pipeline and its Application on the Cucurbita pepo Genome: An Automated Analysis Pipeline for Next Generation Sequencing Data“
